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Ligand · RF5

RF5 · 2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose

RF5, 2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose (C5 H10 F O7 P, 232.1 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
RF5
Formula
C5 H10 F O7 P
Class
ligand
Structures
1
PDB entries
1

Binding sites

RF5 in 1 structure; the first of them:

  • 5UUH · Bacillus cereus DNA glycosylase alkd bound to a yatakemycin-adenine nucleobase adduct and… · RF5 B6 · binds TRP109, ASP113, ARG148, LYS183, TRP187, ARG190, DA5, DA7

Residues it binds most

ARG 1, DA 1, TRP 1, ASP 1, LYS 1 (residue and the binding sites it lines).

Found with

  • YTA · yatakemycin-adenine nucleobase adduct
  • CA · Calcium ion

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