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Ligand · RB8

RB8 · 6-deoxy-6-sulfo-D-fructose

RB8, 6-deoxy-6-sulfo-D-fructose (C6 H12 O8 S, 244.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
RB8
Formula
C6 H12 O8 S
Class
ligand
Structures
3
PDB entries
2

Binding sites

RB8 in 3 structures; the first of them:

  • 7AG6 · Crystal structure of SF kinase YihV from E. coli in complex with sulfofructose (SF)… · RB8 A402 · binds ILE9, VAL11, ASP13, GLY38, GLY39, PRO40, SER95, ILE97 and 8 more
  • 7AG4 · Crystal structure of active site mutant of sq isomerase (yihs-H248A) from salmonella… · RB8 A501 · binds TRP51, ARG55, TYR111, ASN172, MET175, HIS176, ARG238, PHE239 and 7 more
  • 7AG6 · Crystal structure of sf kinase yihv from E. COLI in complex with sulfofructose (sf)… · RB8 A402 · binds ILE9, VAL11, ASP13, GLY38, GLY39, PRO40, SER95, ILE97 and 5 more

Residues it binds most

ASP 10, TRP 6, ARG 10, GLN 6, HIS 6, ILE 4, ASN 10, GLY 4, GLU 6, MET 6 (residue and the binding sites it lines).

Found with

  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion

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