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Ligand · R11

R11 · 4-{[1-methyl-5-(2-methyl-benzoimidazol-1-ylmethyl)-1H-benzoimidazol-2-ylmethyl]-amino}-benzamidine

R11, 4-{[1-methyl-5-(2-methyl-benzoimidazol-1-ylmethyl)-1H-benzoimidazol-2-ylmethyl]-amino}-benzamidine (C25 H25 N7, 423.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its…

Component
R11
Formula
C25 H25 N7
Class
ligand
Structures
6
PDB entries
3

Binding sites

R11 in 6 structures; the first of them:

  • 1G2M · Factor xa inhibitor complex · R11 A1 · binds HIS57, LYS96, GLU97, THR98, TYR99, PHE174, ASP189, ALA190 and 12 more
  • 1G32 · Thrombin inhibitor complex · R11 B1 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 11 more
  • 1G36 · Trypsin inhibitor complex · R11 A990 · binds HIS57, ASN97, THR98, LEU99, GLN175, ASP189, SER190, CYS191 and 10 more
  • 1G2M · Factor xa inhibitor complex · R11 A1 · binds HIS57, LYS96, GLU97, THR98, TYR99, PHE174, ASP189, ALA190 and 12 more
  • 1G32 · Thrombin inhibitor complex · R11 B1 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 11 more
  • 1G36 · Trypsin inhibitor complex · R11 A990 · binds HIS57, ASN97, THR98, LEU99, GLN175, ASP189, SER190, CYS191 and 10 more

Residues it binds most

GLY 6, SER 6, CYS 6, TRP 6, ALA 4, ASP 6, GLN 4, GLU 4, HIS 6, TYR 6 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • SO4 · Sulfate ion

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