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Ligand · PYE

PYE · Tetrahydropyran

PYE, Tetrahydropyran (C5 H10 O, 86.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PYE
Formula
C5 H10 O
Class
ligand
Structures
5
PDB entries
3

Binding sites

PYE in 5 structures; the first of them:

  • 1A65 · Type-2 cu-depleted laccase from coprinus cinereus · PYE A900 · binds PRO55, GLU496, SER499, ILE500, GLN501
  • 1KYA · Active laccase from trametes versicolor complexed with 2,5-xylidine · PYE A508
  • 4ML4 · Crystal structure of the complex of signaling glycoprotein from buffalo (SPB-40) with… · PYE A402 · binds TRP78, LEU119, LEU183, TYR185, TRP331
  • 1A65 · Type-2 cu-depleted laccase from coprinus cinereus · PYE A900 · binds PRO55, GLU496, SER499, ILE500, GLN501
  • 1KYA · Active laccase from trametes versicolor complexed with 2,5-xylidine · PYE A508
  • 4ML4 · Crystal structure of the complex of signaling glycoprotein from buffalo (spb-40) with… · PYE A402 · binds TRP78, LEU119, LEU183, TYR185, TRP331

Residues it binds most

GLN 4, LEU 2, PHE 4, TRP 2, GLU 2, ILE 2, PRO 2, SER 2, TYR 2 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CU · Copper (II) ion
  • XYD · 2,5-dimethylaniline
  • O · Oxygen atom

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