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Ligand · PY4

PY4 · 2-[O-phosphonopyridoxyl]-amino- butyric acid

PY4, 2-[O-phosphonopyridoxyl]-amino- butyric acid (C12 H19 N2 O7 P, 334.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
PY4
Formula
C12 H19 N2 O7 P
Class
ligand
Structures
4
PDB entries
2

Binding sites

PY4 in 4 structures; the first of them:

  • 1CQ6 · Aspartate aminotransferase complex with C4-pyridoxal-5P-phosphate · PY4 A413 · binds ILE17, GLY38, GLY107, GLY108, THR109, TRP140, HIS189, ASN194 and 9 more
  • 1YNU · Crystal structure of apple ACC synthase in complex with L-vinylglycine · PY4 A600 · binds TYR19, GLY44, LEU45, ALA46, GLU47, GLY119, ALA120, THR121 and 14 more
  • 1CQ6 · Aspartate aminotransferase complex with C4-pyridoxal-5P-phosphate · PY4 A413 · binds ILE17, GLY38, GLY107, GLY108, THR109, TRP140, HIS189, ASN194 and 9 more
  • 1YNU · Crystal structure of apple acc synthase in complex with L-vinylglycine · PY4 A600 · binds TYR19, GLY44, LEU45, ALA46, GLU47, GLY119, ALA120, THR121 and 14 more

Residues it binds most

GLY 4, ARG 4, SER 4, TYR 4, ALA 4, ASN 4, THR 4, ASP 4, ILE 4, LYS 4 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • NI · Nickel (II) ion
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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