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Ligand · PP3

PP3 · Alanyl-pyridoxal-5'-phosphate

PP3, Alanyl-pyridoxal-5'-phosphate (C11 H17 N2 O7 P, 320.2 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
PP3
Formula
C11 H17 N2 O7 P
Class
ligand
Structures
11
PDB entries
6

Binding sites

PP3 in 11 structures; the first of them:

  • 1C9C · Aspartate aminotransferase complexed with C3-pyridoxal-5'-phosphate · PP3 A413 · binds ILE17, ILE37, GLY38, GLY107, GLY108, THR109, TRP140, HIS143 and 11 more
  • 1L6F · Alanine racemase bound with N-(5'-phosphopyridoxyl)-L-alanine · PP3 A390 · binds VAL37, LYS39, TYR43, LEU85, KCX129, ARG136, TYR164, HIS166 and 12 more
  • 1WC7 · Fab fragment of plp-dependent catalytic antibody 15A9 in complex with… · PP3 A1214 · binds ASN31, TYR32, HIS34, ARG91, SER92, TYR94, PHE96, TYR33 and 5 more
  • 4A00 · Structure of an engineered aspartate aminotransferase · PP3 A1397 · binds GLY34, GLY102, GLY103, THR104, TRP130, HIS133, HIS178, ASN183 and 8 more
  • 6DYT · Citrobacter freundii tyrosine phenol-lyase F448A mutant complexed with L-alanine · PP3 B1501 · binds TYR71, THR49, SER51, GLN98, GLY99, ARG100, GLU103, PHE123 and 10 more
  • 8SAB · Crystal Structure of Cystathionine beta lyase from Klebsiella aerogenes, PLP adduct with… · PP3 A402 · binds CYS85, GLY86, ALA87, TYR111, GLU154, SER158, ASP185, THR187 and 8 more
  • 1C9C · Aspartate aminotransferase complexed with C3-pyridoxal-5'-phosphate · PP3 A413 · binds ILE17, ILE37, GLY38, GLY107, GLY108, THR109, TRP140, HIS143 and 11 more
  • 1L6F · Alanine racemase bound with N-(5'-phosphopyridoxyl)-L- alanine · PP3 A390 · binds VAL37, LYS39, TYR43, LEU85, KCX129, ARG136, TYR164, HIS166 and 12 more
  • 1WC7 · Fab fragment of plp-dependent catalytic antibody 15A9 in complex with… · PP3 A1214 · binds ASN31, TYR32, HIS34, ARG91, SER92, TYR94, PHE96, TYR33 and 5 more
  • 4A00 · Structure of an engineered aspartate aminotransferase · PP3 A1397 · binds GLY34, GLY102, GLY103, THR104, TRP130, HIS133, HIS178, ASN183 and 8 more
  • 6DYT · Citrobacter freundii tyrosine phenol-lyase F448A mutant complexed with L-alanine · PP3 B1501 · binds TYR71, THR49, SER51, GLN98, GLY99, ARG100, GLU103, PHE123 and 10 more

Residues it binds most

TYR 12, ARG 14, SER 14, GLY 12, LYS 14, THR 8, ASP 14, HIS 10, ASN 12, PHE 10 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • F0G · (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine
  • K · Potassium ion
  • IOD · Iodide ion
  • P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol
  • PEG · Di(hydroxyethyl)ether
  • LYS · Lysine
  • PLP · Pyridoxal-5'-phosphate
  • PO4 · Phosphate ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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