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Ligand · PO8

PO8 · (1~{R},2~{S},3~{S},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol

PO8, (1~{R},2~{S},3~{S},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol (C7 H16 N O5 +1, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues…

Component
PO8
Formula
C7 H16 N O5 +1
Class
ligand
Structures
2
PDB entries
2

Binding sites

PO8 in 2 structures; the first of them:

  • 6YTR · Structure of recombinant human beta-glucocerebrosidase in complex with cyclophellitol… · PO8 AAA501 · binds ASP127, PHE128, TRP179, ASN234, GLU235, PHE246, TYR313, GLU340 and 5 more
  • 8R06 · Crystal structure of thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with a… · PO8 A901 · binds GLU441, TYR445, TYR447, THR450, ASP452, VAL453, HIS507, TYR523 and 9 more

Residues it binds most

GLU 3, TRP 3, TYR 3, ASN 2, ASP 3, PHE 2, ARG 1, CYS 2, SER 2, THR 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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