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Ligand · PKM

PKM · 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid

PKM, 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid (C13 H21 N O10, 351.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within…

Component
PKM
Formula
C13 H21 N O10
Class
ligand
Structures
2
PDB entries
1

Binding sites

PKM in 2 structures; the first of them:

  • 6TYO · Salmonella Typhi PltB Homopentamer with Neu-5NAc-4OAc-alpha-2-3-Gal-beta-1-4-GlcNAc… · PKM F3 · binds ILE47, ASP48, VAL72, GLN75, SER76, ILE107, TRP108, THR109 and 2 more
  • 6TYO · Salmonella typhi pltb homopentamer with neu-5NAC-4OAC-alpha-2-3-gal- beta-1-4-glcnac… · PKM F3 · binds ILE47, ASP48, GLN75, SER76, ILE107, TRP108, THR109, TYR110 and 1 more

Residues it binds most

TYR 10, ILE 6, SER 10, LYS 4, ASP 6, GLN 6, PHE 6, THR 6, TRP 6, ALA 4 (residue and the binding sites it lines).

Found with

  • GAL · beta-D-galactopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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