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Ligand · PDM

PDM · 4-[4-(2,5-dioxo-pyrrolidin-1-yl)-phenylamino]-4-hydroxy-butyric acid

PDM, 4-[4-(2,5-dioxo-pyrrolidin-1-yl)-phenylamino]-4-hydroxy-butyric acid (C14 H16 N2 O5, 292.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
PDM
Formula
C14 H16 N2 O5
Class
ligand
Structures
4
PDB entries
2

Binding sites

PDM in 4 structures; the first of them:

  • 1KWO · SCALLOP MYOSIN S1-ATPgammaS-p-PDM IN THE ACTIN-DETACHED CONFORMATION · PDM A900 · binds PHE464, TYR583, ALA584, HIS689, GLN692, CYS693, LYS705
  • 1L2O · SCALLOP MYOSIN S1-ADP-p-PDM IN THE ACTIN-DETACHED CONFORMATION · PDM A900 · binds PHE464, GLN485, ASN489, TYR583, ALA584, HIS689, GLN692, CYS693 and 1 more
  • 1KWO · Scallop myosin S1-atpgammas-P-pdm in the actin-detached conformation · PDM A900 · binds PHE464, TYR583, ALA584, HIS689, GLN692, CYS693, LYS705
  • 1L2O · Scallop myosin S1-ADP-P-pdm in the actin-detached conformation · PDM A900 · binds PHE464, GLN485, ASN489, TYR583, ALA584, HIS689, GLN692, CYS693 and 1 more

Residues it binds most

GLN 4, ALA 4, CYS 4, HIS 4, LYS 4, PHE 4, TYR 4, ASN 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MG · Magnesium ion
  • ADP · Adenosine-5'-diphosphate
  • AGS · Phosphothiophosphoric acid-adenylate ester

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