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Ligand · PDK

PDK · (10S,13R)-3-{2-[{2-[bis(carboxymethyl)amino]ethyl}(carboxymethyl)amino]ethyl}-10-hydroxy-5,16-dioxo-13-(tetradecanoyloxy)-9,11,15-trioxa-3,6-diaza-10-phosphanonacosan-1-oic acid 10-oxide

PDK, (10S,13R)-3-{2-[{2-[bis(carboxymethyl)amino]ethyl}(carboxymethyl)amino]ethyl}-10-hydroxy-5,16-dioxo-13-(tetradecanoyloxy)-9,11,15-trioxa-3,6-diaza-10-phosphanonacosan-1-oic acid 10-oxide (C47 H87 N4 O17 P, 1011.2 g/mol), in the MolNFT…

Component
PDK
Formula
C47 H87 N4 O17 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

PDK in 2 structures; the first of them:

  • 3A7C · Crystal structure of TLR2-PE-DTPA complex · PDK A581 · binds ILE314, LEU317, ILE319, PHE322, LEU328, LEU335, VAL343, SER346 and 11 more
  • 3A7C · Crystal structure of TLR2-pe-dtpa complex · PDK A581 · binds ILE314, LEU317, ILE319, PHE322, LEU328, LEU335, VAL343, SER346 and 11 more

Residues it binds most

LEU 2, VAL 2, PHE 2, ILE 2, HIS 2, LYS 2, PRO 2, SER 2, TYR 2 (residue and the binding sites it lines).

Found with

  • LU · Lutetium (III) ion
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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