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Ligand · PCP

PCP · 1-alpha-pyrophosphoryl-2-alpha,3-alpha-dihydroxy-4-beta-cyclopentane-methanol-5-phosphate

PCP, 1-alpha-pyrophosphoryl-2-alpha,3-alpha-dihydroxy-4-beta-cyclopentane-methanol-5-phosphate (C6 H15 O13 P3, 388.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (6 PDB entries). Every binding site with its residues…

Component
PCP
Formula
C6 H15 O13 P3
Class
ligand
Structures
6
PDB entries
6

Binding sites

PCP in 6 structures; the first of them:

  • 1A95 · Xprtase from E. COLI complexed with MG:CPRPP and guanine · PCP B301 · binds SER36, ARG37, GLY38, SER62, ARG69, ASP88, ASP89, LEU90 and 6 more
  • 1A96 · Xprtase from E. COLI with bound cprpp and xanthine · PCP B301 · binds ARG53, SER36, ARG37, GLY38, ARG69, ASP88, ASP89, LEU90 and 6 more
  • 1ECC · Escherichia COLI glutamine phosphoribosylpyrophosphate (prpp) amidotransferase complexed… · PCP A505 · binds TYR258, PRO302, GLU303, THR304, LYS326, GLY331, ARG332, THR333 and 12 more
  • 1P4A · Crystal Structure of the PurR complexed with cPRPP · PCP A604 · binds VAL137, ALA138, THR139, LYS140, LYS161, VAL176, SER177, GLY178 and 11 more
  • 1YTE · Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma… · PCP A401 · binds ARG142, PRO239, SER240, SER241, GLY271, GLY272, LEU273, GLY292 and 1 more
  • 2I14 · Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus · PCP A392 · binds PHE134, ARG137, HIS138, MET176, PRO177, HIS178, ARG233, ASP235 and 9 more

Residues it binds most

GLY 17, ARG 17, ASP 16, THR 11, SER 17, VAL 16, LYS 6, HIS 6, PHE 12, LEU 11 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • BO3 · Boric acid
  • GUN · Guanine
  • ONL · 5-oxo-L-norleucine
  • XAN · Xanthine
  • MN · Manganese (II) ion
  • ZN · Zinc ion

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