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Ligand · P6W

P6W · pentanediamide

P6W, pentanediamide (C5 H10 N2 O2, 130.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
P6W
Formula
C5 H10 N2 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

P6W in 2 structures; the first of them:

  • 6YPA · The C146A variant of an amidase from Pyrococcus horikoshii with bound glutaramide · P6W A301 · binds GLU42, TYR48, LYS113, PHE117, GLU120, ALA146, PHE147, TRP149 and 5 more
  • 6YPA · The C146A variant of an amidase from pyrococcus horikoshii with bound glutaramide · P6W A301 · binds GLU42, TYR48, LYS113, PHE117, GLU120, ALA146, PHE147, TRP149 and 4 more

Residues it binds most

GLU 8, PHE 8, ALA 8, ASN 8, LEU 8, LYS 8, MET 8, TRP 8, TYR 8, VAL 8 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol

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