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Ligand · OKD

OKD · N-({(1S)-1-carboxy-5-[4-(2,5,8,11,14-pentaoxapentadec-1-yl)-1H-1,2,3-triazol-1-yl]pentyl}carbamoyl)-L-glutamic acid

OKD, N-({(1S)-1-carboxy-5-[4-(2,5,8,11,14-pentaoxapentadec-1-yl)-1H-1,2,3-triazol-1-yl]pentyl}carbamoyl)-L-glutamic acid (C24 H41 N5 O12, 591.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
OKD
Formula
C24 H41 N5 O12
Class
ligand
Structures
2
PDB entries
1

Binding sites

OKD in 2 structures; the first of them:

  • 2XEJ · Human glutamate carboxypeptidase II in complex with ARM-M4, urea- based inhibitor · OKD A1768 · binds LYS207, VAL208, PHE209, ARG210, ASN257, ASP387, GLU424, GLU425 and 15 more
  • 2XEJ · Human glutamate carboxypeptidase II in complex with arm-M4, urea- based inhibitor · OKD A1768 · binds LYS207, VAL208, PHE209, ARG210, ASN257, ASP387, GLU424, GLU425 and 15 more

Residues it binds most

ARG 2, ASN 2, GLY 2, LYS 2, ASP 2, GLU 2, TYR 2, ALA 2, HIS 2, LEU 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion

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