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Ligand · NON

NON · Methyl nonanoate (ester)

NON, Methyl nonanoate (ester) (C10 H20 O2, 172.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
NON
Formula
C10 H20 O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

NON in 4 structures; the first of them:

  • 1CLY · IgG Fab (human IGG1, kappa) chimeric fragment (CBR96) complexed with lewis Y nonoate… · NON H232 · binds ASP31, TYR32, GLN52A, ASP97
  • 1CLZ · IgG Fab (IGG3, kappa) fragment (MBR96) complexed with lewis Y nonoate methyl ester · NON H236 · binds ASP31, TYR32, GLN52A, ASP97
  • 1CLY · IgG Fab (human IGG1, kappa) chimeric fragment (CBR96) complexed with lewis Y nonoate… · NON H232 · binds ASP31, TYR32, GLN52A, ASP97
  • 1CLZ · IgG Fab (IGG3, kappa) fragment (MBR96) complexed with lewis Y nonoate methyl ester · NON H236 · binds ASP31, TYR32, GLN52A, ASP97

Residues it binds most

ASP 4, GLN 4, TYR 4 (residue and the binding sites it lines).

Found with

  • FUC · alpha-L-fucopyranose
  • GAL · beta-D-galactopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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