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Ligand · NHM

NHM · S-(2-oxo)pentadecylcoa

NHM, S-(2-oxo)pentadecylcoa (C36 H64 N7 O17 P3 S, 991.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
NHM
Formula
C36 H64 N7 O17 P3 S
Class
ligand
Structures
6
PDB entries
3

Binding sites

NHM in 6 structures; the first of them:

  • 1IID · Crystal Structure of Saccharomyces cerevisiae N-myristoyltransferase with Bound… · NHM A500 · binds ASP37, HIS38, LYS39, PHE40, TRP41, ASN102, TYR103, GLU105 and 30 more
  • 2NMT · Myristoyl-COA:PROTEIN N-myristoyltransferase bound to myristoyl-CoA and peptide analogs · NHM A500 · binds HIS38, LYS39, PHE40, TRP41, ASN102, TYR103, VAL104, ILE149 and 28 more
  • 4QBJ · Crystal structure of N-myristoyl transferase from Aspergillus fumigatus complexed with a… · NHM A504 · binds HIS146, TYR147, VAL148, GLU149, VAL210, ILE212, ASN213, PHE214 and 26 more
  • 1IID · Crystal structure of saccharomyces cerevisiae N- myristoyltransferase with bound… · NHM A500 · binds ASP37, HIS38, LYS39, PHE40, TRP41, ASN102, TYR103, GLU105 and 30 more
  • 2NMT · Myristoyl-COA:PROTEIN N-myristoyltransferase bound to myristoyl-CoA and peptide analogs · NHM A500 · binds HIS38, LYS39, PHE40, TRP41, ASN102, TYR103, VAL104, ILE149 and 28 more
  • 4QBJ · Crystal structure of N-myristoyl transferase from aspergillus fumigatus complexed with a… · NHM A504 · binds HIS146, TYR147, VAL148, GLU149, VAL210, ILE212, ASN213, PHE214 and 26 more

Residues it binds most

ILE 6, LEU 6, THR 6, TYR 6, VAL 6, PHE 6, ALA 6, ARG 6, ASN 6, HIS 6 (residue and the binding sites it lines).

Found with

  • 2XQ · 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine
  • MIM · [cyclohexylethyl]-[[[[4-[2-methyl-1-imidazolyl-butyl]phenyl]acetyl]-seryl]-lysinyl]-amine
  • NI · Nickel (II) ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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