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Ligand · NB8

NB8 · 5'-O-[(R)-{[(2S)-2-amino-4-(hydroxyamino)-4-oxobutanoyl]oxy}(hydroxy)phosphoryl]adenosine

NB8, 5'-O-[(R)-{[(2S)-2-amino-4-(hydroxyamino)-4-oxobutanoyl]oxy}(hydroxy)phosphoryl]adenosine (C14 H20 N7 O10 P, 477.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
NB8
Formula
C14 H20 N7 O10 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

NB8 in 2 structures; the first of them:

  • 2XTI · Asparaginyl-tRNA synthetase from Brugia malayi complexed with ATP:Mg and L-Asp-beta-NOH… · NB8 A1549 · binds VAL277, GLU278, SER298, GLN300, ARG321, GLU323, ARG329, HIS330 and 19 more
  • 2XTI · Asparaginyl-tRNA synthetase from brugia malayi complexed with ATP:MG and L-asp-beta-noh… · NB8 A1549 · binds VAL277, GLU278, SER298, GLN300, ARG321, GLU323, ARG329, HIS330 and 19 more

Residues it binds most

GLU 2, GLY 2, ARG 2, TYR 2, HIS 2, ILE 2, VAL 2, ALA 2, GLN 2, LEU 2 (residue and the binding sites it lines).

Found with

  • ATP · Adenosine-5'-triphosphate
  • POP · Pyrophosphate 2-
  • MG · Magnesium ion

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