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Ligand · MDA

MDA · 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose

MDA, 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose (C7 H14 O4, 162.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
MDA
Formula
C7 H14 O4
Class
sugar
Structures
6
PDB entries
3

Binding sites

MDA in 6 structures; the first of them:

  • 146D · Solution structure of the mithramycin dimer-DNA complex · MDA D3 · binds DG5, DA6, DC8, DG9
  • 1BP8 · 4:2:1 mithramycin:Mg++:d(ACCCGGGT)2 complex · MDA D3 · binds DG5, DG6, DG5
  • 207D · Solution structure of mithramycin dimers bound to partially overlapping sites on DNA · MDA D3 · binds DT5, DA6, DA6
  • 146D · Solution structure of the mithramycin dimer-DNA complex · MDA D3 · binds DG5, DA6, DC8, DG9
  • 1BP8 · 4:2:1 MITHRAMYCIN:MG++:D(ACCCGGGT)2 complex · MDA D3 · binds DG5, DG6, DG5
  • 207D · Solution structure of mithramycin dimers bound to partially overlapping sites on DNA · MDA D3 · binds DT5, DA6, DA6

Residues it binds most

DA 16, DG 12, DT 8, DC 4 (residue and the binding sites it lines).

Found with

  • DDA · beta-D-Olivopyranose
  • MG · Magnesium ion
  • DDL · 2,6-dideoxy-beta-D-galactopyranose
  • CRH · 1,2-hydro-1-oxy-3,4-hydro-3-(1-methoxy-2-oxy-3,4-dihydroxypentyl)-8,9-dihyroxy-7-methylanthracene
  • DXB · 1,2-hydro-1-oxy-3,4-hydro-3-(1-methoxy-2-oxy-3,4-dihydroxypentyl)-8,9-dihydroxy-7-methyl-anthracene

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