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Ligand · LVO

LVO · 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid

LVO, 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid (C21 H36 N4 O8, 472.5 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every…

Component
LVO
Formula
C21 H36 N4 O8
Class
sugar
Structures
4
PDB entries
2

Binding sites

LVO in 4 structures; the first of them:

  • 3TI4 · Crystal structure of 2009 pandemic H1N1 neuraminidase complexed with laninamivir octanoate · LVO A801 · binds ARG118, GLU119, LEU134, ASP151, ARG152, ARG156, TRP178, SER179 and 10 more
  • 3TIB · Crystal structure of 1957 pandemic H2N2 neuraminidase complexed with laninamivir octanoate · LVO A801 · binds ARG118, GLU119, LEU134, ASP151, ARG152, ARG156, TRP178, SER179 and 11 more
  • 3TI4 · Crystal structure of 2009 pandemic H1N1 neuraminidase complexed with laninamivir octanoate · LVO A801 · binds ARG118, GLU119, LEU134, ASP151, ARG152, ARG156, TRP178, SER179 and 10 more
  • 3TIB · Crystal structure of 1957 pandemic H2N2 neuraminidase complexed with laninamivir octanoate · LVO A801 · binds ARG118, GLU119, LEU134, ASP151, ARG152, ARG156, TRP178, SER179 and 11 more

Residues it binds most

ARG 12, GLU 12, SER 10, ASN 12, ASP 12, ILE 12, LEU 12, TRP 12, TYR 12, ALA 8 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ACT · Acetate ion
  • GOL · Glycerol

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