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Ligand · LPD

LPD · L-prolinamide

LPD, L-prolinamide (C5 H10 N2 O, 114.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
LPD
Formula
C5 H10 N2 O
Class
ligand
Structures
2
PDB entries
2

Binding sites

LPD in 2 structures; the first of them:

  • 5LGR · Crystal structure of mouse CARM1 in complex with ligand P1C3u · LPD E102 · binds LEU413, THR414, HIS415, TYR417, TYR477, ALA3, ALA4
  • 8HRH · SN-131/1B2 anti-MUC1 antibody with a glycopeptide · LPD B302 · binds TYR59, SER97, HIS98, GLY99, TRP101

Residues it binds most

ALA 4, TYR 5, HIS 5, LEU 4, THR 4, GLY 1, SER 1, TRP 1 (residue and the binding sites it lines).

Found with

  • PEG · Di(hydroxyethyl)ether
  • ACE · Acetyl group
  • ALA · Alanine
  • DXE · 1,2-dimethoxyethane
  • PRO · Proline
  • QVR · (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol
  • A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose
  • GAL · beta-D-galactopyranose
  • SIA · N-acetyl-alpha-neuraminic acid
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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