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Ligand · LCN

LCN · 1,5-anhydro-D-arabino-hex-1-enitol

LCN, 1,5-anhydro-D-arabino-hex-1-enitol (C6 H10 O5, 162.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
LCN
Formula
C6 H10 O5
Class
sugar
Structures
4
PDB entries
2

Binding sites

LCN in 4 structures; the first of them:

  • 3S28 · The crystal structure of sucrose synthase-1 in complex with a breakdown product of the… · LCN A903 · binds GLY303, GLN304, TYR307, HIS438, ALA439, GLU675, ALA676, PHE677 and 2 more
  • 3U2W · Crystal Structure of Human Glycogenin-1 (GYG1) complexed with manganese and glucose or a… · LCN A268 · binds MET75, LEU80, THR83, LYS86, ASP102, ASN133, SER134, GLY135 and 5 more
  • 3S28 · The crystal structure of sucrose synthase-1 in complex with a breakdown product of the… · LCN A903 · binds GLY303, GLN304, TYR307, HIS438, ALA439, GLU675, ALA676, PHE677 and 2 more
  • 3U2W · Crystal structure of human glycogenin-1 (GYG1) complexed with manganese and glucose or a… · LCN A268 · binds MET75, LEU80, THR83, LYS86, ASP102, ASN133, SER134, GLY135 and 5 more

Residues it binds most

GLY 18, ALA 16, LEU 18, GLN 18, GLU 16, HIS 16, PHE 16, TYR 14, LYS 8, ASP 2 (residue and the binding sites it lines).

Found with

  • UDP · Uridine-5'-diphosphate
  • K · Potassium ion
  • MN · Manganese (II) ion
  • GLC · alpha-D-glucopyranose
  • NHF · 1,5-anhydro-D-fructose
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • MLA · Malonic acid

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