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Ligand · L5P

L5P · (2S)-2-azanyl-6-[[(3R,4R)-3,4-bis(oxidanyl)-2-oxidanylidene-5-phosphonooxy-pentyl]amino]hexanoic acid

L5P, (2S)-2-azanyl-6-[[(3R,4R)-3,4-bis(oxidanyl)-2-oxidanylidene-5-phosphonooxy-pentyl]amino]hexanoic acid (C11 H23 N2 O9 P, 358.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with…

Component
L5P
Formula
C11 H23 N2 O9 P
Class
ligand
Structures
3
PDB entries
3

Binding sites

L5P in 3 structures; the first of them:

  • 4WXY · Plps (inactive glutaminase mutant) co-crystallized with glutamine and R5P. · L5P A81 · binds ASP24, MET43, ALA44, LEU45, PRO49, MET61, ALA80, VAL82 and 15 more
  • 4WXZ · Pdxs (G. stearothermophilus) co-crystallized with R5P · L5P A81 · binds ASP24, MET43, ALA44, LEU45, MET61, ALA80, VAL82, LEU93 and 15 more
  • 4WY0 · Pdxs (G. stearothermophilus) co-crystallized with R5P in the presence of ammonia. · L5P A81 · binds ASP24, MET43, LEU45, MET61, ALA80, VAL82, LEU93, ASP102 and 15 more

Residues it binds most

GLY 20, VAL 20, LEU 20, ALA 20, ASP 20, MET 20, SER 20, PRO 20, PHE 20, ARG 17 (residue and the binding sites it lines).

Found with

  • R5P · Ribose-5-phosphate
  • PO4 · Phosphate ion
  • CAC · Cacodylate ion
  • EDO · 1,2-ethanediol

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