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Ligand · KDH

KDH · (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate

KDH, (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate (C22 H18 O11, 458.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its…

Component
KDH
Formula
C22 H18 O11
Class
ligand
Structures
2
PDB entries
2

Binding sites

KDH in 2 structures; the first of them:

  • 8R6V · The complex of glycogen phosphorylase with EGCG (epigallocatechin gallate) and caffeine. · KDH A930 · binds ASP118, GLU120, GLU121, GLU124, CYS495, ASN541, LYS544, PHE545 and 6 more
  • 6S2G · Structure of D80A-fructofuranosidase from xanthophyllomyces dendrorhous complexed with… · KDH A1002 · binds TRP77, ASN79, TRP105, GLU334, GLN335, GLN341, HIS343, TRP393 and 3 more

Residues it binds most

GLU 10, PRO 10, ALA 10, GLN 8, ASN 6, LYS 8, LEU 6, THR 6, TRP 4, ARG 6 (residue and the binding sites it lines).

Found with

  • CFF · Caffeine
  • BMA · beta-D-mannopyranose
  • FRU · beta-D-fructofuranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • DMS · Dimethyl sulfoxide
  • EDO · 1,2-ethanediol

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