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Ligand · JQ6

JQ6 · [(2~{S})-2-acetyloxy-3-[[(2~{S})-3-[(2~{R},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-3-(octadecanoylamino)-4,5-bis(oxidanyl)oxan-2-yl]oxy-1-oxidanylidene-1-(pentylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propyl] ethanoate

JQ6, [(2~{S})-2-acetyloxy-3-[[(2~{S})-3-[(2~{R},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-3-(octadecanoylamino)-4,5-bis(oxidanyl)oxan-2-yl]oxy-1-oxidanylidene-1-(pentylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propyl] ethanoate (C39…

Component
JQ6
Formula
C39 H73 N2 O15 P
Class
ligand
Structures
3
PDB entries
3

Binding sites

JQ6 in 3 structures; the first of them:

  • 7ZGY · S-layer Deinoxanthin Binding Complex, C3 symmetry · JQ6 A1202 · binds ILE542, GLY544, VAL545, ARG565, GLY566, TYR583, GLN585, GLY587 and 7 more
  • 8ACQ · S-layer Deinoxanthin-Binding Complex (SDBC), subunit DR_2577 assembled with its SOD… · JQ6 A1202 · binds ILE542, GLY544, VAL545, ARG565, GLY566, TYR583, GLN585, GLY587 and 7 more
  • 8AGD · Full SDBC and SOD assembly · JQ6 A1202 · binds ILE542, GLY544, VAL545, ARG565, GLY566, TYR583, GLN585, GLY587 and 7 more

Residues it binds most

ARG 9, GLY 9, VAL 9, TYR 9, ASP 9, GLN 9, SER 9, THR 9, ILE 3, PHE 3 (residue and the binding sites it lines).

Found with

  • JPI · (3~{S},5~{R},6~{R})-5-[(3~{S},7~{R},12~{S},16~{S},20~{S})-3,7,12,16,20,24-hexamethyl-24-oxidanyl-pentacosyl]-4,4,6-trimethyl-cyclohexane-1,3-diol
  • JPX · [(2~{S})-3-[[(2~{S})-3-[(2~{S},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3-(propanoylamino)oxan-2-yl]oxy-1-oxidanylidene-1-(pentadecylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-2-octanoyloxy-propyl] decanoate
  • CU · Copper (II) ion
  • FE · Fe (III) ion

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