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Ligand · JD9

JD9 · 2,6,11-trimethoxy-4,7,9-tris(oxidanyl)-1,12-bis[(2R)-2-oxidanylpropyl]perylene-3,10-dione

JD9, 2,6,11-trimethoxy-4,7,9-tris(oxidanyl)-1,12-bis[(2R)-2-oxidanylpropyl]perylene-3,10-dione (C29 H28 O10, 536.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within…

Component
JD9
Formula
C29 H28 O10
Class
ligand
Structures
2
PDB entries
1

Binding sites

JD9 in 2 structures; the first of them:

  • 7EUU · Crystal structures of 2-oxoglutarate dependent dioxygenase (CTB9) in complex with… · JD9 A403 · binds GLY58, GLY59, TYR107, ARG111, ILE135, GLY136, HIS137, LEU138 and 15 more
  • 7EUU · Crystal structures of 2-oxoglutarate dependent dioxygenase (CTB9) in complex with… · JD9 A403 · binds GLY58, GLY59, TYR107, ARG111, ILE135, GLY136, HIS137, LEU138 and 15 more

Residues it binds most

ARG 4, GLN 4, GLY 4, MET 4, ASP 4, HIS 4, ASN 4, ILE 4, LEU 4, TYR 4 (residue and the binding sites it lines).

Found with

  • OGA · N-oxalylglycine
  • CU · Copper (II) ion
  • EDO · 1,2-ethanediol

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