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Ligand · IKV

IKV · [(2~{R})-2-hexadecanoyloxy-3-[(2~{S},3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-propyl] hexadecanoate

IKV, [(2~{R})-2-hexadecanoyloxy-3-[(2~{S},3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-propyl] hexadecanoate (C41 H78 O10, 731.0 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB…

Component
IKV
Formula
C41 H78 O10
Class
ligand
Structures
1
PDB entries
1

Binding sites

IKV in 1 structure; the first of them:

  • 7Z6Q · Cryo-EM structure of the whole photosynthetic complex from the green sulfur bacteria · IKV A819 · binds ILE291, CYS295, PHE298, ARG366, ILE377, VAL381, PHE385, MET474 and 21 more

Residues it binds most

GLY 2, ILE 2, PHE 2, VAL 2, ALA 2, ASP 2, LEU 2, MET 2, TYR 2, SER 2 (residue and the binding sites it lines).

Found with

  • BCL · Bacteriochlorophyll A
  • CLA · Chlorophyll A
  • F39 · [(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10, 12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate
  • GS0 · Bacteriochlorophyll A isomer
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • SF4 · Iron/sulfur cluster
  • CA · Calcium ion

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