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Ligand · HB0

HB0 · trans-4-(hydroxymethyl)cyclohexanol

HB0, trans-4-(hydroxymethyl)cyclohexanol (C7 H14 O2, 130.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
HB0
Formula
C7 H14 O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

HB0 in 4 structures; the first of them:

  • 4LJ3 · Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in… · HB0 A405 · binds VAL129, THR138, GLY139, CYS140, HIS196, GLY198, VAL230, GLU232 and 5 more
  • 4LYK · Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in… · HB0 A402 · binds VAL129, THR138, GLY139, CYS140, HIS196, GLY198, VAL230, GLU232 and 5 more
  • 4LJ3 · Crystal structure of the eal domain of C-di-gmp specific phosphodiesterase yaha in… · HB0 A405 · binds VAL129, THR138, GLY139, CYS140, HIS196, GLY198, VAL230, GLU232 and 5 more
  • 4LYK · Crystal structure of the eal domain of C-di-gmp specific phosphodiesterase yaha in… · HB0 A402 · binds VAL129, THR138, GLY139, CYS140, HIS196, GLY198, VAL230, GLU232 and 5 more

Residues it binds most

VAL 12, GLY 12, PHE 12, ALA 12, CYS 12, GLU 12, HIS 12, LYS 12, THR 12 (residue and the binding sites it lines).

Found with

  • C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
  • CA · Calcium ion
  • MG · Magnesium ion
  • EDO · 1,2-ethanediol
  • IMD · Imidazole

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