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Ligand · GZ6

GZ6 · Guanidinium

GZ6, Guanidinium (C H6 N3 +1, 60.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GZ6
Formula
C H6 N3 +1
Class
ligand
Structures
6
PDB entries
5

Binding sites

GZ6 in 6 structures; the first of them:

  • 7JJU · Crystal structure of en exoribonuclease-resistant RNA (xrRNA) from Potato leafroll virus… · GZ6 A101 · binds A4, C5, A37, A38, G39, U40
  • 7PYC · Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum… · GZ6 A802 · binds GLU685, ILE686, ILE687, TYR702
  • 7Q2I · Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum… · GZ6 A803 · binds ILE650, GLU685, ILE686, ILE687, TYR702
  • 7Q9W · Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum… · GZ6 A802 · binds ASP623, THR654, TRP692
  • 7Z9V · Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum… · GZ6 A801 · binds ILE650, GLU685, ILE686, ILE687, TYR702
  • 7JJU · Crystal structure of en exoribonuclease-resistant RNA (xrrna) from potato leafroll virus… · GZ6 A101 · binds A4, A37, A38, G39, U40

Residues it binds most

G 16, A 13, U 15, ILE 3, C 6, GLU 3, TYR 3, ASP 2, LEU 1, PRO 1 (residue and the binding sites it lines).

Found with

  • IRI · Iridium hexammine ion
  • CAC · Cacodylate ion
  • 2AP · 2-aminopyridine
  • 9NN · 4-(aminomethyl)pyridin-2-amine
  • IJ8 · (3~{S},4~{R})-oxolane-3,4-diol
  • XHG · 1-[(2R)-oxolan-2-yl]methanamine

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