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Ligand · GXT

GXT · ethanedial

GXT, ethanedial (C2 H2 O2, 58.0 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GXT
Formula
C2 H2 O2
Class
ligand
Structures
6
PDB entries
3

Binding sites

GXT in 6 structures; the first of them:

  • 4CO9 · Crystal structure of kynurenine formamidase from Bacillus anthracis · GXT A1212 · binds ARG81, GLY183, ASP184, ASP64
  • 4OE7 · Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed… · GXT A409 · binds SER56, GLY57, TYR145, PHE147, THR176, GLY202, TYR203, PHE265 and 1 more
  • 5A8Q · Crystal structure beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex… · GXT A1374 · binds GLY194, ASN195, ARG200
  • 4CO9 · Crystal structure of kynurenine formamidase from bacillus anthracis · GXT A1212 · binds ARG81, GLY183, ASP184, ASP64
  • 4OE7 · Crystal structure of yage, a kdg aldolase protein, in complex with aldol condensed… · GXT A409 · binds SER56, GLY57, TYR145, PHE147, THR176, GLY202, TYR203, PHE265 and 1 more
  • 5A8Q · Crystal structure beta-glucanase SDGLUC5_26A from saccharophagus degradans in complex… · GXT A1374 · binds GLY194, ASN195, ARG200

Residues it binds most

GLY 8, ARG 4, ASN 4, ASP 2, PHE 2, TYR 2, ALA 2, GLU 2, PRO 2, SER 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • GOL · Glycerol
  • GXP · (4S)-4-hydroxy-2,5-dioxopentanoic acid
  • GXS · (4R)-4-hydroxy-2,5-dioxopentanoic acid
  • PYR · Pyruvic acid
  • ZN · Zinc ion
  • BGC · beta-D-glucopyranose
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • DIO · 1,4-diethylene dioxide
  • EDO · 1,2-ethanediol
  • PGE · Triethylene glycol

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