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Ligand · GUP

GUP · alpha-L-gulopyranose

GUP, alpha-L-gulopyranose (C6 H12 O6, 180.2 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GUP
Formula
C6 H12 O6
Class
ligand
Structures
10
PDB entries
5

Binding sites

GUP in 10 structures; the first of them:

  • 1E05 · Plasma alpha antithrombin-III · GUP D3
  • 1FQ6 · X-ray structure of glycol inhibitor pd-133,450 bound to saccharopepsin · GUP B5 · binds GLN142
  • 1MCO · Three-dimensional structure of a human immunoglobulin with a hinge deletion · GUP A8 · binds SER224, VAL225, PHE226, LYS319
  • 3HN3 · Human beta-glucuronidase at 1.7 A resolution · GUP C10
  • 7FIR · The crystal structure of beta-1,2-mannobiose phosphorylase in complex with 1,4-mannobiose · GUP F2 · binds ARG43, LEU51, PHE62, GLU97, THR113, PHE115, PHE123, LYS148 and 1 more
  • 1E05 · Plasma alpha antithrombin-III · GUP D3
  • 1FQ6 · X-ray structure of glycol inhibitor pd-133,450 bound to saccharopepsin · GUP B5 · binds GLN142
  • 1MCO · Three-dimensional structure of a human immunoglobulin with a hinge deletion · GUP A8 · binds SER224, VAL225, PHE226, LYS319
  • 3HN3 · Human beta-glucuronidase at 1.7 a resolution · GUP C10
  • 7FIR · The crystal structure of beta-1,2-mannobiose phosphorylase in complex with 1,4-mannobiose · GUP F2 · binds ARG43, LEU51, PHE62, GLU97, THR113, PHE115, PHE123, LYS148 and 1 more

Residues it binds most

PHE 10, LYS 10, ARG 8, ASP 8, GLU 8, THR 8, LEU 4, GLN 2, SER 2, VAL 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MAN · alpha-D-mannopyranose
  • GAL · beta-D-galactopyranose
  • 0QF · N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide
  • Z2D · alpha-L-allopyranose
  • ZN · Zinc ion
  • FUL · beta-L-fucopyranose
  • SIA · N-acetyl-alpha-neuraminic acid
  • PO4 · Phosphate ion
  • 1PE · Pentaethylene glycol
  • GOL · Glycerol

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