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Ligand · GPJ

GPJ · Glyphosate

GPJ, Glyphosate (C3 H9 N O5 P +1, 170.1 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GPJ
Formula
C3 H9 N O5 P +1
Class
ligand
Structures
9
PDB entries
7

Binding sites

GPJ in 9 structures; the first of them:

  • 7F7M · AKR4C17 in complex with NADP+ and glyphosate · GPJ A401 · binds TRP21, VAL48, TYR49, TRP80, HIS111, TRP112, TRP212, LEU287 and 1 more
  • 7TM6 · Crystal structure of shikimate-3-phosphate and glyphosate bound 3-phosphoshikimate… · GPJ A502 · binds LYS22, ASP49, ASN94, ALA95, GLY96, THR97, ARG100, ARG124 and 8 more
  • 8UMJ · Wild type EPSP synthase complexed with glyphosate and shikimate-3-phosphate · GPJ A501 · binds LYS24, ASP51, ASN99, ALA100, GLY101, THR102, ARG105, ARG131 and 8 more
  • 8UMK · EPSPS TIPS variant complexed with glyphosate and shikimate-3-phosphate · GPJ A502 · binds LYS24, ASP51, ASN99, ALA100, GLY101, ILE102, ARG105, ARG131 and 8 more
  • 8UML · EPSPS TIPS P126S variant complexed with glyphosate and shikimate-3-phosphate · GPJ A502 · binds LYS24, ASP51, ASN99, ALA100, GLY101, ILE102, ARG105, ARG131 and 8 more
  • 8UMM · EPSPS TIPS K296R variant complexed with glyphosate and shikimate-3-phosphate · GPJ A502 · binds LYS24, ASP51, ASN99, ALA100, GLY101, ILE102, ARG105, ARG131 and 8 more
  • 8UMN · EPSPS TIPS P126S K296R variant complexed with glyphosate and shikimate-3-phosphate · GPJ A502 · binds LYS24, ASP51, ASN99, ALA100, GLY101, ILE102, ARG105, ARG131 and 8 more
  • 7F7M · AKR4C17 in complex with NADP+ and glyphosate · GPJ A401 · binds TRP21, VAL48, TYR49, TRP80, HIS111, TRP112, TRP212, PHE291
  • 7TM6 · Crystal structure of shikimate-3-phosphate and glyphosate bound 3- phosphoshikimate… · GPJ A502 · binds LYS22, ASN94, ALA95, GLY96, THR97, ARG100, ARG124, GLN171 and 6 more

Residues it binds most

ARG 14, LYS 14, ASP 14, HIS 16, ALA 14, ASN 14, GLN 14, GLU 14, GLY 14, ILE 8 (residue and the binding sites it lines).

Found with

  • S3P · Shikimate-3-phosphate
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • SO4 · Sulfate ion
  • 1PE · Pentaethylene glycol
  • GOL · Glycerol

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