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Ligand · GE6

GE6 · [[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

GE6, [[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (C10 H15 F N3 O15 P3, 529.2 g/mol), in the MolNFT…

Component
GE6
Formula
C10 H15 F N3 O15 P3
Class
ligand
Structures
4
PDB entries
2

Binding sites

GE6 in 4 structures; the first of them:

  • 7AAP · Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer… · GE6 T1601 · binds LYS545, VAL557, ASP623, THR680, SER682, THR687, ASN691, SER759 and 6 more
  • 7CTT · Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in… · GE6 A1004 · binds LYS545, ARG553, ARG555, VAL557, ASP618, TYR619, LYS621, CYS622 and 10 more
  • 7AAP · NSP7-NSP8-NSP12 SARS-COV2 RNA-dependent RNA polymerase in complex with TEMPLATE:PRIMER… · GE6 T1601 · binds LYS545, VAL557, ASP623, THR680, SER682, THR687, ASN691, SER759 and 6 more
  • 7CTT · Cryo-EM structure of favipiravir bound to replicating polymerase complex of SARS-cov-2 in… · GE6 A1004 · binds LYS545, ARG553, ARG555, VAL557, ASP618, TYR619, LYS621, CYS622 and 10 more

Residues it binds most

ASP 4, LYS 4, SER 4, THR 4, A 4, ARG 2, ASN 4, C 4, U 4, VAL 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • POP · Pyrophosphate 2-

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