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Ligand · GDX

GDX · Guanosine 5'-(trihydrogen diphosphate), P'-D-mannopyranosyl ester

GDX, Guanosine 5'-(trihydrogen diphosphate), P'-D-mannopyranosyl ester (C16 H23 N5 O17 P2, 619.3 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
GDX
Formula
C16 H23 N5 O17 P2
Class
ligand
Structures
9
PDB entries
5

Binding sites

GDX in 9 structures; the first of them:

  • 1MFZ · Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa · GDX B503 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 17 more
  • 1MUU · 2.0 A crystal structure of GDP-mannose dehydrogenase · GDX B1005 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 18 more
  • 1MV8 · 1.55 A crystal structure of a ternary complex of GDP-mannose dehydrogenase from… · GDX A2005 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 18 more
  • 2Y4M · MANNOSYLGLYCERATE SYNTHASE IN COMPLEX WITH GDP-Mannose · GDX A401 · binds PRO7, PHE8, LYS9, HIS10, GLU11, ILE35, GLY36, TYR37 and 18 more
  • 1MFZ · Partially refined 2.8 a crystal structure of GDP-mannose dehydrogenase from P. aeruginosa · GDX B503 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 17 more
  • 1MUU · 2.0 a crystal structure of GDP-mannose dehydrogenase · GDX B1005 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 18 more
  • 1MV8 · 1.55 a crystal structure of a ternary complex of GDP-mannose dehydrogenase from… · GDX A2005 · binds GLU157, PHE158, LEU159, ARG160, GLU161, LYS210, ASN214, HIS217 and 18 more
  • 2BO8 · Dissection of mannosylglycerate synthase: an archetypal mannosyltransferase · GDX A400 · binds PRO7, PHE8, LYS9, HIS10, GLU11, ILE35, GLY36, TYR37 and 19 more
  • 2Y4M · Mannosylglycerate synthase in complex with GDP-mannose · GDX A401 · binds PRO7, PHE8, LYS9, HIS10, GLU11, ILE35, GLY36, TYR37 and 18 more

Residues it binds most

GLY 38, PHE 38, LYS 38, LEU 38, TYR 38, ASP 38, GLU 38, ARG 36, ASN 24, PRO 38 (residue and the binding sites it lines).

Found with

  • NAD · Nicotinamide-adenine-dinucleotide
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose
  • CL · Chloride ion
  • MG · Magnesium ion
  • ACY · Acetic acid
  • EDO · 1,2-ethanediol
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • MN · Manganese (II) ion

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