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Ligand · GDR

GDR · Guanosine-5'-diphosphate-rhamnose

GDR, Guanosine-5'-diphosphate-rhamnose (C16 H25 N5 O15 P2, 589.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
GDR
Formula
C16 H25 N5 O15 P2
Class
ligand
Structures
3
PDB entries
2

Binding sites

GDR in 3 structures; the first of them:

  • 1N7G · Crystal Structure of the GDP-mannose 4,6-dehydratase ternary complex with NADPH and… · GDR A801 · binds SER117, HIS118, VAL119, SER162, SER163, GLU164, TYR185, LEU212 and 19 more
  • 7KF3 · Crystal structure of GDP-mannose 4,6-dehydratase from Brucella abortus (strain 2308) in… · GDR A400 · binds SER90, HIS91, VAL92, ALA93, THR133, SER134, GLU135, TYR157 and 18 more
  • 7KF3 · Crystal structure of GDP-mannose 4,6-dehydratase from brucella abortus (strain 2308) in… · GDR A400 · binds SER90, HIS91, VAL92, THR133, SER134, GLU135, TYR157, ASN186 and 16 more

Residues it binds most

VAL 11, ARG 11, SER 11, TYR 11, ASN 11, THR 11, GLU 11, PHE 11, LEU 11, GLY 11 (residue and the binding sites it lines).

Found with

  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate

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