GL1X · GenesisL1 explorer

Ligand · GDE

GDE · 3,4,5-trihydroxybenzoic acid

GDE, 3,4,5-trihydroxybenzoic acid (C7 H6 O5, 170.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
GDE
Formula
C7 H6 O5
Class
ligand
Structures
3
PDB entries
2

Binding sites

GDE in 3 structures; the first of them:

  • 7K4O · Tannin acyl hydrolase from Aspergillus niger · GDE A603 · binds GLY116, GLY117, SER206, GLU207, ALA232, TRP235, GLN238, GLN239 and 5 more
  • 8OM0 · Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and… · GDE A401 · binds A181, C357, C358, G359, G374, U375, C377
  • 7K4O · Tannin acyl hydrolase from aspergillus niger · GDE A603 · binds GLY116, GLY117, SER206, GLU207, ALA232, GLN238, GLN239, HIS242 and 4 more

Residues it binds most

GLN 2, GLY 2, HIS 2, SER 2, C 1, ALA 2, G 1, GLU 2, ILE 2, LEU 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • FWN · 2-[2-(2-ethoxyethoxy)ethoxy]ethanol
  • CA · Calcium ion
  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion
  • MG · Magnesium ion

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