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Ligand · GDA

GDA · 4-amino-4-deoxy-beta-D-glucopyranose

GDA, 4-amino-4-deoxy-beta-D-glucopyranose (C6 H13 N O5, 179.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
GDA
Formula
C6 H13 N O5
Class
sugar
Structures
2
PDB entries
1

Binding sites

GDA in 2 structures; the first of them:

  • 1OCB · Structure of the wild-type cellobiohydrolase Cel6A from Humicolas insolens in complex… · GDA C4 · binds ASP180, ALA182, ALA183, ASP226, HIS271, TRP274, VAL308, ALA309 and 2 more
  • 1OCB · Structure of the wild-type cellobiohydrolase CEL6A from humicolas insolens in complex… · GDA C4 · binds ASP180, ALA182, ALA183, ASP226, HIS271, TRP274, VAL308, ALA309 and 2 more

Residues it binds most

ALA 4, ASP 4, TRP 4, ASN 4, HIS 4, VAL 4 (residue and the binding sites it lines).

Found with

  • FLG · Fluoresceinylthioureido
  • BGC · beta-D-glucopyranose
  • GTM · methyl 4-thio-beta-D-glucopyranoside
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • GOL · Glycerol

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