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Ligand · GAV

GAV · Guanosine-5'-rp-alpha-thio-triphosphate

GAV, Guanosine-5'-rp-alpha-thio-triphosphate (C10 H16 N5 O13 P3 S, 539.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
GAV
Formula
C10 H16 N5 O13 P3 S
Class
ligand
Structures
8
PDB entries
4

Binding sites

GAV in 8 structures; the first of them:

  • 2V0N · Activated response regulator pled in complex with C-digmp and GTP- alpha-S · GAV A600 · binds LEU294, ASP327, ILE328, ASP329, PHE330, PHE331, LYS332, ASN335 and 9 more
  • 4H54 · Crystal structure of the diguanylate cyclase DgcZ · GAV A402 · binds LEU134, ASP165, ILE166, ASP167, ARG168, PHE169, LYS170, ASN173 and 12 more
  • 4ISZ · RNA ligase RtcB in complex with GTP alphaS and Mn(II) · GAV A501 · binds ILE74, ASP95, CYS98, GLY201, ASN202, HIS203, PHE204, GLU206 and 18 more
  • 4ZVF · Crystal structure of GGDEF domain of the E. coli DosC - form II (GTP-alpha-S-bound) · GAV A501 · binds ASP333, VAL334, ASP335, LYS336, PHE337, LYS338, GLU339, ASN341 and 9 more
  • 2V0N · Activated response regulator pled in complex with C-digmp and GTP- alpha-S · GAV A600 · binds LEU294, ASP327, ILE328, ASP329, PHE330, PHE331, LYS332, ASN335 and 9 more
  • 4H54 · Crystal structure of the diguanylate cyclase dgcz · GAV A402 · binds LEU134, ASP165, ILE166, ASP167, ARG168, PHE169, LYS170, ASN173 and 12 more
  • 4ISZ · RNA ligase rtcb in complex with GTP alphas and MN(II) · GAV A501 · binds ILE74, ASP95, CYS98, GLY201, ASN202, HIS203, PHE204, GLU206 and 18 more
  • 4ZVF · Crystal structure of ggdef domain of the E. COLI dosc - form II (GTP- alpha-S-bound) · GAV A501 · binds ASP333, VAL334, ASP335, LYS336, PHE337, LYS338, GLU339, ASN341 and 9 more

Residues it binds most

ARG 14, ASP 14, GLY 14, LYS 18, GLU 18, HIS 14, ASN 14, LEU 10, PHE 14, ALA 10 (residue and the binding sites it lines).

Found with

  • C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
  • MG · Magnesium ion
  • SO4 · Sulfate ion
  • BEF · Beryllium trifluoride ion
  • CA · Calcium ion
  • MN · Manganese (II) ion
  • ZN · Zinc ion
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose
  • CL · Chloride ion
  • EDO · 1,2-ethanediol

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