Ligand · G8D

G8D · [(2R,3S,4R,5R)-5-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate

G8D, [(2R,3S,4R,5R)-5-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate (C10 H15 N5 O12 P2, 459.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1…

Component: G8D
Formula: C10 H15 N5 O12 P2
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

G8D in 1 structure; the first of them:

5GGA · Crystal structure of Mycobacterium smegmatis MutT1 in complex with 8-oxo-GDP, 8-oxo-GMP… · G8D A401 · binds ARG55, ARG57, TYR58, ASP60, SER62, LYS65, LYS67, VAL99 and 5 more

Residues it binds most

ASP 1, LYS 1, TYR 1, ARG 1, SER 1, VAL 1 (residue and the binding sites it lines).

Found with

8GM · [(2R,3S,4R,5R)-5-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
POP · Pyrophosphate 2-
MG · Magnesium ion

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