EM4 · N-[(2S,3S,4R)-3,4-dihydroxy-8-oxo-8-[(6-phenylhexyl) amino]-1-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octan-2-yl]hexacosanamide

Binding sites

EM4 in 3 structures; the first of them:

• 6C6E · Structure of glycolipid AGSA[26,6P] in complex with mouse CD1D · EM4 A305 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP63, LEU66, MET69 and 24 more
• 6CX9 · Structure of alpha-GSA[16,6P] bound by CD1D and in complex with the VA14VB8.2 TCR · EM4 A308 · binds LEU66, TYR73, SER76, PHE77, ASP80, ILE81, LEU84, VAL85 and 21 more
• 6CXE · Structure of alpha-GSA[26,6P] bound by CD1D and in complex with the VA14VB8.2 TCR · EM4 A306 · binds PRO29, ASN31, ASP94, ARG95, GLY96, PHE10, CYS12, GLN14 and 29 more

Residues it binds most

LEU 3, PHE 3, VAL 3, ASP 3, TRP 3, GLY 3, ILE 3, SER 3, CYS 3, PRO 2 (residue and the binding sites it lines).

Found with

• NA · Sodium ion
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
• FUC · alpha-L-fucopyranose