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Ligand · EGY

EGY · (4R,7R)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(undecanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphadocosan-1-aminium

EGY, (4R,7R)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(undecanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphadocosan-1-aminium (C33 H67 N O8 P +1, 636.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every…

Component
EGY
Formula
C33 H67 N O8 P +1
Class
ligand
Structures
6
PDB entries
4

Binding sites

EGY in 6 structures; the first of them:

  • 6S7O · Cryo-EM structure of human oligosaccharyltransferase complex OST-A · EGY A815 · binds LYS19, LEU20, LEU23, SER24, ALA27, VAL28, ILE129, TYR132 and 6 more
  • 6S7T · Cryo-EM structure of human oligosaccharyltransferase complex OST-B · EGY A913 · binds PHE85, LEU89, VAL92, ILE93, PHE95, GLU96, SER97, ILE153 and 7 more
  • 8PN9 · Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1 · EGY A803 · binds LEU221, LEU224, VAL225, LEU228, THR229, ARG231, PHE379, LEU382 and 12 more
  • 6C26 · The cryo-EM structure of a eukaryotic oligosaccharyl transferase complex · EGY A801 · binds ILE37, SER41, ARG112, ASN113, LEU117, LEU121, TYR303
  • 6S7O · Cryo-EM structure of human oligosaccharyltransferase complex ost-a · EGY A815 · binds LYS19, LEU20, LEU23, SER24, VAL28, ILE129, TYR132, HIS133 and 4 more
  • 6S7T · Cryo-EM structure of human oligosaccharyltransferase complex ost-B · EGY A913 · binds PHE85, VAL92, ILE93, PHE95, SER97, ASP168, PHE172

Residues it binds most

LEU 38, PHE 36, ILE 34, VAL 27, TYR 26, SER 29, ARG 25, MET 21, ASN 16, THR 14 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • KZB · (2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[(1~{S},2~{R},3~{R},4~{R},5'~{S},6~{S},7~{R},8~{S}, 9~{R},12~{R},13~{R},15~{S},16~{S},18~{R})-5',7,9,13-tetramethyl-3,15-bis(oxidanyl)spiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13, 18}]icosane-6,2'-oxane]-16-yl]oxy-oxane-3,4,5-triol
  • MAN · alpha-D-mannopyranose
  • MG · Magnesium ion
  • 0K3 · (2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl dihydrogen phosphate
  • KZE · [(3~{R},6~{Z},10~{Z},14~{Z},18~{Z})-3,7,11,15,19,23-hexamethyltetracosa-6,10,14,18,22-pentaenyl] dihydrogen phosphate
  • OTP · (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl trihydrogen diphosphate
  • ZXT · 5-(dimethylsulfamoyl)-~{N}-(5-methyl-1,3-thiazol-2-yl)-2-pyrrolidin-1-yl-benzamide
  • MN · Manganese (II) ion
  • GLC · alpha-D-glucopyranose
  • NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose

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