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Ligand · DXL

DXL · D-xylaric acid

DXL, D-xylaric acid (C5 H8 O7, 180.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DXL
Formula
C5 H8 O7
Class
ligand
Structures
4
PDB entries
2

Binding sites

DXL in 4 structures; the first of them:

  • 3OZM · Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed… · DXL A391 · binds SER25, ALA27, LYS30, SER144, TYR147, LYS171, LYS173, ASP201 and 6 more
  • 3OZY · Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed… · DXL B392 · binds SER25, ALA27, LYS30, PRO55, SER144, TYR147, LYS171, LYS173 and 7 more
  • 3OZM · Crystal structure of enolase superfamily member from bordetella bronchiseptica complexed… · DXL A391 · binds SER25, ALA27, LYS30, SER144, TYR147, LYS171, LYS173, ASP201 and 6 more
  • 3OZY · Crystal structure of enolase superfamily member from bordetella bronchiseptica complexed… · DXL B392 · binds SER25, ALA27, LYS30, PRO55, SER144, TYR147, LYS171, LYS173 and 7 more

Residues it binds most

GLU 14, LYS 14, SER 14, ALA 14, ASN 14, ASP 14, HIS 14, PHE 14, TYR 14, PRO 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • GOL · Glycerol
  • LY9 · L-arabinaric acid
  • ACY · Acetic acid

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