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Ligand · DX5

DX5 · D-xylitol-5-phosphate

DX5, D-xylitol-5-phosphate (C5 H13 O8 P, 232.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DX5
Formula
C5 H13 O8 P
Class
ligand
Structures
6
PDB entries
3

Binding sites

DX5 in 6 structures; the first of them:

  • 2FLI · The crystal structure of D-ribulose 5-phosphate 3-epimerase from Streptococus pyogenes… · DX5 A1901 · binds SER9, LEU11, HIS34, ASP36, MET38, HIS67, MET69, MET138 and 14 more
  • 4KXV · Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal… · DX5 A1012 · binds HIS37, HIS77, HIS110, GLY123, GLN189, HIS258
  • 4KXW · Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal… · DX5 A1016 · binds HIS37, HIS77, HIS110, GLY123, GLN189, HIS258
  • 2FLI · The crystal structure of D-ribulose 5-phosphate 3-epimerase from streptococus pyogenes… · DX5 A1901 · binds SER9, LEU11, HIS34, ASP36, MET38, HIS67, MET69, MET138 and 14 more
  • 4KXV · Human transketolase in covalent complex with donor ketose D-xylulose- 5-phosphate… · DX5 A1012 · binds HIS37, HIS77, HIS110, GLY123, GLN189, HIS258
  • 4KXW · Human transketolase in covalent complex with donor ketose D-xylulose- 5-phosphate… · DX5 A1016 · binds HIS37, HIS77, HIS110, GLY123, GLN189, HIS258

Residues it binds most

GLY 30, HIS 30, MET 24, ASP 24, SER 24, VAL 24, GLN 30, ALA 24, LEU 24, PHE 24 (residue and the binding sites it lines).

Found with

  • TPP · Thiamine diphosphate
  • EDO · 1,2-ethanediol
  • CA · Calcium ion
  • MG · Magnesium ion
  • NA · Sodium ion
  • ZN · Zinc ion

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