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Ligand · DOI

DOI · 9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-(phosphonooxy)-9H-purine

DOI, 9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-(phosphonooxy)-9H-purine (C10 H14 N4 O10 P2, 412.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues…

Component
DOI
Formula
C10 H14 N4 O10 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

DOI in 4 structures; the first of them:

  • 2DGN · Mouse Muscle Adenylosuccinate Synthetase partially ligated complex with GTP, 2'-deoxy-IMP · DOI A1451 · binds TRP41, GLY42, ASP43, LYS46, ASN68, ALA69, GLY70, HIS71 and 16 more
  • 2GCQ · Fully ligated E.Coli Adenylosuccinate Synthetase with GTP, 2'-deoxy-IMP and Hadacidin · DOI A451 · binds TRP11, GLY12, ASP13, LYS16, ASN38, ALA39, GLY40, HIS41 and 16 more
  • 2DGN · Mouse muscle adenylosuccinate synthetase partially ligated complex with GTP, 2'-deoxy-imp · DOI A1451 · binds TRP41, GLY42, ASP43, LYS46, ASN68, ALA69, GLY70, HIS71 and 16 more
  • 2GCQ · Fully ligated E.COLI adenylosuccinate synthetase with GTP, 2'-deoxy- imp and hadacidin · DOI A451 · binds TRP11, GLY12, ASP13, LYS16, ASN38, ALA39, GLY40, HIS41 and 16 more

Residues it binds most

GLY 4, THR 4, ALA 4, ILE 4, VAL 4, ASN 4, LYS 4, ARG 4, ASP 4, HIS 4 (residue and the binding sites it lines).

Found with

  • GDP · Guanosine-5'-diphosphate
  • MG · Magnesium ion
  • HDA · Hadacidin

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