Ligand · DM5
DM5 · Idarubicin
DM5, Idarubicin (C26 H27 N O9, 497.5 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- DM5
- Formula
- C26 H27 N O9
- Class
- ligand
- Structures
- 8
- PDB entries
- 5
Binding sites
DM5 in 8 structures; the first of them:
- 198D · A trigonal form of the idarubicin-D(CGATCG) complex: crystal and molecular structure at… · DM5 A25 · binds DT4, DC5, DG6, DC7, DG8, DA9, DT10
- 1D38 · Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the… · DM5 A7 · binds DT4, DC5, DG6
- 1D67 · The molecular structure of an idarubicin-D(TGATCA) complex at high resolution · DM5 A7 · binds DT4, DC5, DA6
- 3ARQ · Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors… · DM5 A606 · binds TRP275, GLY320, GLY321, LYS370, ASP392, PHE393, TRP397, TYR435 and 2 more
- 4LB2 · X-ray study of human serum albumin complexed with idarubicin · DM5 A601 · binds PHE36, LEU115, VAL116, ARG117, PRO118, LYS137, TYR138, GLU141 and 2 more
- 198D · A trigonal form of the idarubicin-D(CGATCG) complex: crystal and molecular structure at… · DM5 A25 · binds DT4, DC5, DG6, DC7, DG8, DA9, DT10
- 1D38 · Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the… · DM5 A7 · binds DT4, DC5, DG6
- 1D67 · The molecular structure of an idarubicin-D(TGATCA) complex at high resolution · DM5 A7 · binds DT4, DC5, DA6
- 3ARQ · Crystal structure analysis of chitinase a from vibrio harveyi with novel inhibitors… · DM5 A606 · binds TRP275, GLY320, GLY321, LYS370, ASP392, PHE393, TRP397, TYR435 and 2 more
Residues it binds most
DC 12, DG 10, DT 12, DA 10, TYR 6, PHE 5, ARG 5, LYS 6, GLU 4, GLY 2 (residue and the binding sites it lines).
Found with
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