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Ligand · DHK

DHK · 3-dehydroshikimate

DHK, 3-dehydroshikimate (C7 H10 O5, 174.2 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DHK
Formula
C7 H10 O5
Class
ligand
Structures
9
PDB entries
6

Binding sites

DHK in 9 structures; the first of them:

  • 1GTZ · Structure of STREPTOMYCES COELICOLOR TYPE II DEHYDROQUINASE R23A MUTANT IN COMPLEX WITH… · DHK A1162 · binds PRO15, TYR28, ASN79, ALA81, ALA82, HIS85, HIS106, ILE107 and 5 more
  • 1SFJ · 2.4A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, with… · DHK A239 · binds THR9, GLU35, ARG37, THR68, ARG70, HIS133, LYS160, ALA162 and 6 more
  • 1WE2 · Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with… · DHK A181 · binds ASP34, ILE45, PHE49, GLU54, PHE57, ARG58, GLU61, GLY79 and 4 more
  • 2O7Q · Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H) · DHK A9241 · binds GLU124, ARG126, THR153, ARG155, ASP186, HIS214, LYS241, LEU269 and 5 more
  • 2O7S · Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H) · DHK A9241 · binds GLU124, ARG126, ARG155, ASP186, HIS214, LYS241, LEU269, MET271 and 5 more
  • 3PHJ · Shikimate 5-Dehydrogenase (aroE) from Helicobacter pylori in complex with… · DHK A500 · binds VAL8, SER16, LYS17, SER18, ASN63, VAL64, THR65, LYS69 and 6 more
  • 1GTZ · Structure of streptomyces coelicolor type II dehydroquinase R23A mutant in complex with… · DHK A1162 · binds PRO15, TYR28, ASN79, ALA81, ALA82, HIS85, HIS106, ILE107 and 5 more
  • 1SFJ · 2.4A crystal structure of staphylococcus aureus type I 3- dehydroquinase, with… · DHK A239 · binds THR9, GLU35, ARG37, THR68, ARG70, HIS133, LYS160, ALA162 and 6 more
  • 1WE2 · Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with… · DHK A181 · binds ASP34, ILE45, PHE49, GLU54, PHE57, ARG58, GLU61, GLY79 and 4 more

Residues it binds most

ARG 32, ALA 30, HIS 32, ILE 32, SER 30, ASP 34, TYR 32, ASN 28, PRO 24, LYS 10 (residue and the binding sites it lines).

Found with

  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • TLA · L(+)-tartaric acid

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