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Ligand · DGN

DGN · D-glutamine

DGN, D-glutamine (C5 H10 N2 O3, 146.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DGN
Formula
C5 H10 N2 O3
Class
ligand
Structures
6
PDB entries
3

Binding sites

DGN in 6 structures; the first of them:

  • 1B74 · Glutamate racemase from aquifex pyrophilus · DGN A538 · binds GLY11, ALA69, CYS70, ASN71, THR72, THR114, THR117, GLY177 and 1 more
  • 3NW3 · Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with the… · DGN D203 · binds SER139, ASN140, ASN63, LEU64, TRP98, LYS144, ASP148, VAL149 and 1 more
  • 4DIG · Crystal Structure of C-lobe of Bovine lactoferrin Complexed with N-acetylmuramyl l-alanyl… · DGN A707 · binds VAL591
  • 1B74 · Glutamate racemase from aquifex pyrophilus · DGN A538 · binds GLY11, ALA69, CYS70, ASN71, THR72, THR114, THR117, GLY177 and 1 more
  • 3NW3 · Crystal structure of the complex of peptidoglycan recognition protein (pgrp-S) with the… · DGN D203 · binds SER139, ASN140, ASN63, LEU64, TRP98, LYS144, ASP148, VAL149 and 1 more
  • 4DIG · Crystal structure of C-lobe of bovine lactoferrin complexed with N- acetylmuramyl… · DGN A711 · binds VAL591

Residues it binds most

ASN 4, THR 2, ALA 4, CYS 2, GLY 2, VAL 4, ASP 2, LEU 2, LYS 2, SER 2 (residue and the binding sites it lines).

Found with

  • ALA · Alanine
  • LAC · Lactic acid
  • NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose
  • FE · Fe (III) ion
  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CO3 · Carbonate ion
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • TLA · L(+)-tartaric acid

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