Ligand · DDQ
DDQ · Decylamine-N,N-dimethyl-N-oxide
DDQ, Decylamine-N,N-dimethyl-N-oxide (C12 H27 N O, 201.3 g/mol), in the MolNFT structures on GenesisL1: bound in 38 records (21 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- DDQ
- Formula
- C12 H27 N O
- Class
- ligand
- Structures
- 38
- PDB entries
- 21
Binding sites
DDQ in 38 structures; the first of them:
- 5UXI · Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme · DDQ A300 · binds VAL29, GLY32, GLU33, ALA36, TYR40, GLU61, GLN111, GLU116 and 3 more
- 6ET4 · Human dihydroorotate dehydrogenase in complex with novel inhibitor · DDQ A504 · binds TYR38, LEU42, LEU46, PHE62, LEU67, LEU68, PRO69
- 6GK0 · Human dihydroorotate dehydrogenase in complex with class III histone deacetylase inhibitor · DDQ A512 · binds GLU53, ARG57, HIS101, PRO125, GLN126, ASN150, SER151, HIS152
- 6Q4N · Fusidic acid bound AcrB_V340A · DDQ B1113 · binds MET1, PHE4, PHE5, PHE11, ILE15
- 6Q4O · Fusidic acid bound AcrB_I27A · DDQ A1107 · binds PHE512, TRP515, ARG518
- 6VND · Quaternary Complex of human dihydroorotate dehydrogenase (DHODH) with flavin… · DDQ A404 · binds TYR37, LEU41, LEU45, LEU57, ALA58, PHE61, LEU66, LEU67 and 1 more
- 6ZO6 · Minocycline binding to the deep binding pocket of AcrB-G619P · DDQ A1105 · binds PHE386, PHE388, ARG468, ILE472
- 6ZO7 · 3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer · DDQ C1111 · binds PHE388, ALA457, ARG468, GLN469, SER471, ILE472, VAL475
- 6ZO8 · Minocycline binding to the deep binding pocket of AcrB-G621P · DDQ B1121 · binds TRP13, ILE17, THR495, TRP895
- 6ZOA · Partially induced AcrB T protomer and DDM binding to the TM8/PC2 pathway of AcrB L2… · DDQ A1106 · binds TYR35, PRO36, THR37, ILE38, ALA39, PHE563, LEU564, PRO669 and 6 more
- 6ZOB · 3-Formylrifamycin SV binding to the access pocket of AcrB L protomer · DDQ B1103 · binds ARG8, PHE11, GLY440, VAL443, GLY444, CYS887, ALA890, LEU891
- 6ZOC · Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin… · DDQ B1108 · binds PHE4, ARG8, PHE11, VAL14, ILE18, MET447, CYS887, LEU891
- 6ZOF · Fusidic acid binding to the TM7/TM8 groove of AcrB-F380A T protomer · DDQ B1102 · binds PHE4, ARG8, PHE11, ILE18, GLN439, GLY440, VAL443, GLY444 and 4 more
- 6ZOG · Minocycline binding to the deep binding pocket of AcrB-I38F_I671T · DDQ C1311 · binds ARG468, SER471
- 7OUK · BDM88855 inhibitor bound to the transmembrane domain of AcrB · DDQ B1515 · binds PHE4, ARG8, PHE11, ILE18, GLN439, GLY440, VAL443, GLY444 and 4 more
- 7OUL · BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A · DDQ C1604 · binds MET1, PHE4, PHE5, ILE487
- 7OUM · BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A · DDQ A1104 · binds TRP13, ILE17, MET20, MET496
Residues it binds most
PHE 66, ALA 34, ILE 39, ARG 40, LEU 27, VAL 24, GLY 19, SER 22, TRP 21, MET 22 (residue and the binding sites it lines).
Found with
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