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Ligand · DAD

DAD · 2',3'-dideoxyadenosine-5'-triphosphate

DAD, 2',3'-dideoxyadenosine-5'-triphosphate (C10 H16 N5 O11 P3, 475.2 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
DAD
Formula
C10 H16 N5 O11 P3
Class
ligand
Structures
11
PDB entries
10

Binding sites

DAD in 11 structures; the first of them:

  • 1CJT · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, LEU438, GLY439 and 14 more
  • 1CJU · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, SER402, ILE437 and 15 more
  • 1CJV · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, SER402, ILE437 and 15 more
  • 1KEJ · Crystal Structure of Murine Terminal Deoxynucleotidyl Transferase complexed with ddATP · DAD A601 · binds GLY332, GLY333, ARG336, LYS338, GLY341, HIS342, ASP343, ASP345 and 7 more
  • 1SKR · T7 DNA Polymerase Complexed To DNA Primer/Template and ddATP · DAD A4004 · binds 2DA22, DT4, DT5, ARG429, ASP475, ALA476, SER477, GLY478 and 9 more
  • 1SL0 · Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a… · DAD A4004 · binds HIS506, ARG518, LYS522, TYR526
  • 1SL2 · Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn… · DAD A4004 · binds 2DA22, TTD5, ARG429, ASP475, ALA476, SER477, GLY478, LEU479 and 8 more
  • 2BQU · DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal… · DAD A1342 · binds ASP7, PHE8, ASP9, TYR10, PHE11, TYR12, VAL43, ALA44 and 10 more
  • 3EZ5 · Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and… · DAD A201 · binds ARG615, ASP653, TYR654, SER655, GLN656, ILE657, GLU658, HIS682 and 9 more
  • 8ICU · DNA polymerase beta (pol B) (E.C.2.7.7.7) complexed with seven base pairs of DNA; soaked… · DAD A338 · binds DG7, DA8, ARG149, GLY179, SER180, ARG183, SER187, SER188 and 4 more
  • 1CJT · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, LEU438, GLY439 and 14 more
  • 1CJU · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, SER402, ILE437 and 15 more
  • 1CJV · Complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex… · DAD A102 · binds ASP396, ILE397, GLU398, GLY399, PHE400, THR401, SER402, ILE437 and 15 more
  • 8ICU · DNA polymerase beta (pol B) (E.C.2.7.7.7) complexed with seven base pairs of DNA; soaked… · DAD A338 · binds DA8, ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190 and 1 more

Residues it binds most

ASP 14, ARG 16, ILE 8, GLY 12, LYS 14, SER 12, TYR 7, GLU 11, PHE 8, THR 9 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • FOK · Forskolin
  • GSP · 5'-guanosine-diphosphate-monothiophosphate
  • CL · Chloride ion
  • MN · Manganese (II) ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • NA · Sodium ion
  • ZN · Zinc ion
  • CA · Calcium ion
  • CO · Cobalt (II) ion
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose

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