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Ligand · DAB

DAB · 2,4-diaminobutyric acid

DAB, 2,4-diaminobutyric acid (C4 H10 N2 O2, 118.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
DAB
Formula
C4 H10 N2 O2
Class
ligand
Structures
4
PDB entries
4

Binding sites

DAB in 4 structures; the first of them:

  • 5YU4 · Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid… · DAB A403 · binds ARG49, GLU63, MET65, LYS77, VAL79, TYR81, ILE94, THR118 and 6 more
  • 6SL8 · Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its… · DAB A201 · binds LEU32, ASP33, TRP79, GLN80, THR114, THR115, HIS155, GLU158
  • 6SLL · Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its… · DAB A202 · binds LEU32, ASP33, TRP79, GLN80, THR114, THR115, GLU158, TYR38
  • 6TWM · Product bound structure of the Ectoine utilization protein EutE (DoeB) from Ruegeria… · DAB A402 · binds HIS58, GLU61, ARG100, ASN110, HIS144, SER145, LEU150, PHE152 and 5 more

Residues it binds most

GLU 14, ARG 12, HIS 9, THR 7, LEU 9, ALA 8, TRP 8, ASP 7, GLY 7, ILE 5 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • COA · Coenzyme A
  • NAD · Nicotinamide-adenine-dinucleotide
  • MG · Magnesium ion
  • ZN · Zinc ion
  • ACT · Acetate ion
  • GOL · Glycerol

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