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Ligand · D71

D71 · 1-(3-nitrophenyl)-3-(pyridin-4-ylmethyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione

D71, 1-(3-nitrophenyl)-3-(pyridin-4-ylmethyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (C19 H13 N5 O4, 375.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5…

Component
D71
Formula
C19 H13 N5 O4
Class
ligand
Structures
4
PDB entries
2

Binding sites

D71 in 4 structures; the first of them:

  • 3G4G · Crystal structure of human phosphodiesterase 4d with regulatory domain and d155871 · D71 A901 · binds VAL193, PHE196, ILE197, THR200, PHE201, TYR325, HIS326, MET439 and 13 more
  • 3G4I · Crystal structure of human phosphodiesterase 4d with d155871 · D71 A901 · binds TYR325, HIS326, MET439, ASP484, LEU485, ASN487, TYR495, TRP498 and 8 more
  • 3G4G · Crystal structure of human phosphodiesterase 4D with regulatory domain and D155871 · D71 A901 · binds VAL193, PHE196, ILE197, THR200, PHE201, TYR325, HIS326, MET439 and 13 more
  • 3G4I · Crystal structure of human phosphodiesterase 4D with D155871 · D71 A901 · binds TYR325, HIS326, MET439, ASP484, LEU485, ASN487, TYR495, TRP498 and 8 more

Residues it binds most

MET 16, PHE 16, TYR 16, ILE 16, THR 16, ASN 16, ASP 16, GLN 16, HIS 16, LEU 16 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • CA · Calcium ion
  • SO4 · Sulfate ion
  • EOH · Ethanol

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