Ligand · D2C

D2C · (2s,4s,4ar,5as,6s,11r,11as,12r,12ar)-7-chloro-4-(dimethylamino)-6,10,11,12-tetrahydroxy-1,3-dioxo-1,2,3,4,4A,5,5A,6,11,11A,12,12A-dodecahydrotetracene-2-carboxamide

D2C, (2s,4s,4ar,5as,6s,11r,11as,12r,12ar)-7-chloro-4-(dimethylamino)-6,10,11,12-tetrahydroxy-1,3-dioxo-1,2,3,4,4A,5,5A,6,11,11A,12,12A-dodecahydrotetracene-2-carboxamide (C21 H25 Cl N2 O7, 452.9 g/mol), in the MolNFT structures on…

Component: D2C
Formula: C21 H25 Cl N2 O7
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

D2C in 2 structures; the first of them:

2F4V · 30S ribosome + designer antibiotic · D2C A1636 · binds A965, G966, G1053, C1054, C1195, U1196, G1197, G1198
2F4V · 30S ribosome + designer antibiotic · D2C A1636 · binds A965, G966, G1053, C1054, C1195, U1196, G1197, G1198

Residues it binds most

G 2, C 2, A 2, U 2 (residue and the binding sites it lines).

Found with

AB9 · (2R)-4-amino-N-{(1R,2S,3R,4R,5S)-5-amino-2-{2-[(2-aminoethyl)amino]ethoxy}-4-[(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide
K · Potassium ion
MG · Magnesium ion
ZN · Zinc ion

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